2011

Jiang M, Osterlund P, Sarin LP, Poranen MM, Bamford DH, Guo D, Julkunen I."Innate Immune Responses in Human Monocyte-Derived Dendritic Cells Are Highly Dependent on the Size and the 5' Phosphorylation of RNA Molecules."J Immunol. 2011 Jul 8.

Chen P,Lepikhova T, Hu Y, Monni O, Hautaniemi S. "Comprehensive exon array data processing method for quantitative analysis of alternative spliced variants."Nucleic Acids Res. 2011 Jul 10

Wei Zheng, Tuomas Tammela, Masahiro Yamamoto, Andrey Anisimov, Tanja Holopainen, Seppo Kaijalainen, Terhi Karpanen, Kaisa Lehti, Seppo Ylä-Herttuala, and Kari Alitalo "Notch restricts lymphatic vessel sprouting induced by vascular endothelial growth factor." Blood 2011 May 12 [Epub ahead of print]

2010

Zhang, L., F. Zhou, W. Han, B. Shen, J. Luo, M. Shibuya and Y. He "VEGFR-3 ligand-binding and kinase activity are required for lymphangiogenesis but not for angiogenesis." Cell Res 20(12): 1319-31.

Tvorogov, D., A. Anisimov, W. Zheng, V. M. Leppanen, T. Tammela, S. Laurinavicius, W. Holnthoner, H. Helotera, T. Holopainen, M. Jeltsch, N. Kalkkinen, H. Lankinen, P. M. Ojala and K. Alitalo "Effective suppression of vascular network formation by combination of antibodies blocking VEGFR ligand binding and receptor dimerization." Cancer Cell 18(6): 630-40.

Chen, T., L. Hedman, P. S. Mattila, T. Jartti, O. Ruuskanen, M. Soderlund-Venermo and K. Hedman "Serological evidence of Merkel cell polyomavirus primary infections in childhood." J Clin Virol.

Dakic, G., T. Kallonen, A. Elomaa, T. Pljesa, M. Vignjevic-Krastavcevic and Q. He "Bordetella pertussis vaccine strains and circulating isolates in Serbia." Vaccine 28(5): 1188-92.

Fang, S. and P. Salven "Stem cells in tumor angiogenesis." J Mol Cell Cardiol.

Ge, S., V. Danino, Q. He, J. C. Hinton and K. Granfors "Microarray analysis of response of Salmonella during infection of HLA-B27- transfected human macrophage-like U937 cells." BMC Genomics 11: 456.

Hairong, N., P. Zengchang, W. Shaojie, G. Weiguo, Z. Lei, R. Jie, N. Feng, J. Tuomilehto and Q. Qing "Serum uric acid, plasma glucose and diabetes." Diab Vasc Dis Res 7(1): 40-6.

Hermans, K., F. Claes, W. Vandevelde, W. Zheng, I. Geudens, F. Orsenigo, F. De Smet, E. Gjini, K. Anthonis, B. Ren, D. Kerjaschki, M. Autiero, A. Ny, M. Simons, M. Dewerchin, S. Schulte-Merker, E. Dejana, K. Alitalo and P. Carmeliet "Role of synectin in lymphatic development in zebrafish and frogs." Blood 116(17): 3356-66.

Jolma, A., T. Kivioja, J. Toivonen, L. Cheng, G. Wei, M. Enge, M. Taipale, J. M. Vaquerizas, J. Yan, M. J. Sillanpaa, M. Bonke, K. Palin, S. Talukder, T. R. Hughes, N. M. Luscombe, E. Ukkonen and J. Taipale "Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities." Genome Res 20(6): 861-73.

Li Tian, Heikki Rauvala “Immune Functions of Glia and Neurons in the Central Nervous System” Current Immunology Reviews 6(3): 160-166

Lu, X., J. Pan, J. Tao and D. Guo "SARS-CoV nucleocapsid protein antagonizes IFN-beta response by targeting initial step of IFN-beta induction pathway, and its C-terminal region is critical for the antagonism." Virus Genes.

Ma, H., S. Torvinen, M. Silvennoinen, R. Rinnankoski-Tuikka, H. Kainulainen, J. Morko, Z. Peng, U. M. Kujala, P. Rahkila and H. Suominen "Effects of diet-induced obesity and voluntary wheel running on bone properties in young male C57BL/6J mice." Calcif Tissue Int 86(5): 411-9.

Mertsola, J., O. Van Der Meeren, Q. He, A. Linko-Parvinen, G. Ramakrishnan, L. Mannermaa, M. Soila, M. Pulkkinen and J. M. Jacquet "Decennial administration of a reduced antigen content diphtheria and tetanus toxoids and acellular pertussis vaccine in young adults." Clin Infect Dis 51(6): 656-62.

Mikkonen, L., P. Pihlajamaa, B. Sahu, F. P. Zhang and O. A. Janne "Androgen receptor and androgen-dependent gene expression in lung." Mol Cell Endocrinol 317(1-2): 14-24.

Ovaska, K., M. Laakso, S. Haapa-Paananen, R. Louhimo, P. Chen, V. Aittomaki, E. Valo, J. Nunez-Fontarnau, V. Rantanen, S. Karinen, K. Nousiainen, A. M. Lahesmaa-Korpinen, M. Miettinen, L. Saarinen, P. Kohonen, J. Wu, J. Westermarck and S. Hautaniemi "Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme." Genome Med 2(9): 65.

Simmons, R. K., K. G. Alberti, E. A. Gale, S. Colagiuri, J. Tuomilehto, Q. Qiao, A. Ramachandran, N. Tajima, I. Brajkovich Mirchov, A. Ben-Nakhi, G. Reaven, B. Hama Sambo, S. Mendis and G. Roglic "The metabolic syndrome: useful concept or clinical tool? Report of a WHO Expert Consultation." Diabetologia 53(4): 600-5.


von Numers, N., M. Survila, M. Aalto, M. Batoux, P. Heino, E. T. Palva and J. Li "Requirement of a homolog of glucosidase II beta-subunit for EFR-mediated defense signaling in Arabidopsis thaliana." Mol Plant 3(4): 740-50.

Wang, H., A. Alminaite, A. Vaheri and A. Plyusnin "Interaction between hantaviral nucleocapsid protein and the cytoplasmic tail of surface glycoprotein Gn." Virus Res 151(2): 205-12.

Wei H, Koivisto A, Pertovaara A “Spinal TRPA1 ion channels contribute to cutaneous neurogenic inflammation in the rat”  Neurosci Lett. 479(3):253-6

Wei, G. H., G. Badis, M. F. Berger, T. Kivioja, K. Palin, M. Enge, M. Bonke, A. Jolma, M. Varjosalo, A. R. Gehrke, J. Yan, S. Talukder, M. Turunen, M. Taipale, H. G. Stunnenberg, E. Ukkonen, T. R. Hughes, M. L. Bulyk and J. Taipale "Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo." EMBO J 29(13): 2147-60.

Wu, Y., C. Liu, M. Sun, H. Shen, D. Guo and B. Gao "A specific cytotoxic T-lymphocyte epitope presentation system for antitumor immunity." Int J Cancer 126(10): 2373-86.

Yan, W., H. Zhu, Y. Yang, J. Chen, Y. Zhang and B. Shen "Effects of time point measurement on the reconstruction of gene regulatory networks." Molecules 15(8): 5354-68.

Yuan, Q. and J. Jantti "Functional analysis of phosphorylation on Saccharomyces cerevisiae syntaxin 1 homologues Sso1p and Sso2p." PLoS One 5(10): e13323.

Zhou, F., Z. Chang, L. Zhang, Y. K. Hong, B. Shen, B. Wang, F. Zhang, G. Lu, D. Tvorogov, K. Alitalo, B. A. Hemmings, Z. Yang and Y. He "Akt/Protein kinase B is required for lymphatic network formation, remodeling, and valve development." Am J Pathol 177(4): 2124-33.

Zhou, X., Z. Pang, W. Gao, S. Wang, L. Zhang, F. Ning and Q. Qiao "Performance of an A1C and fasting capillary blood glucose test for screening newly diagnosed diabetes and pre-diabetes defined by an oral glucose tolerance test in Qingdao, China." Diabetes Care 33(3): 545-50.

Zhou, X. H., Q. Qiao, B. Zethelius, K. Pyorala, S. Soderberg, A. Pajak, C. D. Stehouwer, R. J. Heine, P. Jousilahti, G. Ruotolo, P. M. Nilsson, G. Calori and J. Tuomilehto "Diabetes, prediabetes and cancer mortality." Diabetologia 53(9): 1867-76.

Zou J, Li WQ, Li Q, Li XQ, Zhang JT, Liu GQ, Chen J, Qiu XX, Tian FJ, Wang ZZ, Zhu N, Qin YW, Shen B, Liu TX, Jing Q.” Two Functional MicroRNA-126s Repress a Novel Target Gene p21-Activated Kinase 1 to Regulate Vascular Integrity in Zebrafish.” Circ Res. 2010 Dec 9.




2009 and Before

Chen Y, Cai H, Pan J, Xiang N, Tien P, Ahola T, Guo D (2009)."Functional screen reveals SARS coronavirus nonstructural protein nsp14 as a novel cap N7 methyltransferase." Proc Natl Acad Sci U S A 106(9):3484-9.

Wei H, Hämäläinen MM, Saarnilehto M, Koivisto A, Pertovaara A."Attenuation of mechanical hypersensitivity by an antagonist of the TRPA1 ion channel in diabetic animals." Anesthesiology. 111(1):147-54.

Tian L, Rauvala H, Gahmberg CG(2009)."Neuronal regulation of immune responses in the central nervous system."Trends Immunol.30(2):91-9.

Wu, J., T. Vallenius, K. Ovaska, J. Westermarck, T. P. Makela and S. Hautaniemi (2009). "Integrated network analysis platform for protein-protein interactions." Nat Methods 6(1): 75-7.

Cheng, F., M. Weidner-Glunde, M. Varjosalo, E. M. Rainio, A. Lehtonen, T. F. Schulz, P. J. Koskinen, J. Taipale and P. M. Ojala (2009). "KSHV reactivation from latency requires Pim-1 and Pim-3 kinases to inactivate the latency-associated nuclear antigen LANA." PLoS Pathog 5(3): e1000324.

Holopainen T, Huang H, Chen C, Kim KE, Zhang L, Zhou F, Han W, Li C, Yu J, Wu J, Koh GY, Alitalo K, He Y (2009)."Angiopoietin-1 overexpression modulates vascular endothelium to facilitate tumor cell dissemination and metastasis establishment."Cancer Res.69(13):5618.

Qi CJ, Zheng L, Ma HB, Fei M, Qian KQ,  Wu CP, Shen BR, Vihinen M, Zhang XG (2009)."A novel mutation in CD40 and its functional characterization."Hum Mutat. 30(6):985-94.

Tang, J., W. P. Hanage, C. Fraser and J. Corander (2009). "Identifying currents in the gene pool for bacterial populations using an integrative approach." PLoS Comput Biol 5(8): e1000455.

Varjosalo, M., M. Bjorklund, F. Cheng, H. Syvanen, T. Kivioja, S. Kilpinen, Z. Sun, O. Kallioniemi, H. G. Stunnenberg, W. W. He, P. Ojala and J. Taipale (2008). "Application of active and kinase-deficient kinome collection for identification of kinases regulating hedgehog signaling." Cell 133(3): 537-48.

Yu LY, Saarma M, Arumäe U(2008)."Death receptors and caspases but not mitochondria are activated in the GDNF- or BDNF-deprived dopaminergic neurons."J Neurosci. 28(30):7467-75.

Li J, Brader G, Palva ET. ”Kunitz trypsin inhibitor: an antagonist of cell death triggered by phytopathogens and fumonisin b1 in Arabidopsis.” Mol Plant. 1(3):482-95.

Tian L, Lappalainen J, Autero M, Hänninen S, Rauvala H, Gahmberg CG(2008)."Shedded neuronal ICAM-5 suppresses T-cell activation."Blood 111(7):3615-25.

Tian L, Stefanidakis M, Ning L, Van Lint P, Nyman-Huttunen H, Libert C, Itohara S, Mishina M, Rauvala H, Gahmberg CG(2007)."Activation of NMDA receptors promotes dendritic spine development through MMP-mediated ICAM-5 cleavage."J Cell Biol.178(4):687-700

Varjosalo, M., S. P. Li and J. Taipale (2006). "Divergence of hedgehog signal transduction mechanism between Drosophila and mammals." Dev Cell 10(2): 177-86.

Li J, Brader G, Kariola T, Palva ET.”WRKY70 modulates the selection of signaling pathways in plant defense” Plant J. 46(3):477-91.